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Title |
Engineer
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| Mail |
This e-mail address is being protected from spam bots, you need JavaScript enabled to view it
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| Address |
Symbiose
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INRIA/Irisa - Campus de Beaulieu
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35042 RENNES Cedex - France
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| Tel |
+33 2 99 84 71 95
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| Fax |
+33 2 99 84 71 71
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| Current Position |
Research Engineer (Rennes 1 University)
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Certifications:
- PMP (Project Manager Professional)
Current projects:
- Implementation of the Logol language. Logol is a highly expressive pattern language with a grammar describing biological structure (word complement, repetitions, substitution or distance ...). It is built to run on a single computer or a DRM system. It also provide graphical editing workflow tool to build the grammars and web-based analyser tools
- Development of an indexation system for biological data with scalability, high availability and ready to use image for the biology community (SeqCrawler project).
- Set up of a private cloud
Current Job: In charge of the developments for the GenOUEST bioinformatics platform http://www.genouest.org
- Installation and maintenance of tools for the grid
- Development of tools and services to access and use the platform
- Development of specific tools in collaboration with Symbiose team (dna/protein sequence analysis, pattern search...)
- Give the platform a larger visibility to the community
- Develop collaboration with other community teams or private companies
- Developments:
- prolog unit test framework (https://sourceforge.net/projects/plunittest/)
- iziworkflow (web diagram editor, https://gforge.inria.fr/projects/iziworkflow/)
- seqcrawler (Biologicial data indexation plafform,
https://sourceforge.net/projects/seqcrawler/)
- Cassiopee (ruby library to search in strings with allowed errors)
- Manband (multi master, multi node workflow orchestrator in Ruby)
- Bandit (pure HTML/Javascript diagram editor library)
- Debian developper
Biblio:
- AnnotQTL: a new tool to gather functional and comparative information on a genomic region (Nucl. Acids Res. 2011 doi: 10.1093/nar/gkr361)
- Poster seqcrawler: BOSC 2011, ISMB 2011
- Seqcrawler: biological data indexing and browsing platform, BMC BioInformatics, doi:10.1186/1471-2105-13-175
- GPSy: a cross-species gene prioritization system for conserved biological processes - applicaton in male gamete development (NAR). doi: 10.1093/nar/gks380
Previous position:
- Project manager for Alcatel-Lucent :
- development of softwares for the international market
- collaboration with Genesys for call center software related developments
- context: GSM, PSTN, VoIP, media server, call center, Intelligent Networks (Prepaid/postpaid)
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