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Title |
PhD Student
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| Mail |
This e-mail address is being protected from spam bots, you need JavaScript enabled to view it
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| Address |
Symbiose
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INRIA/Irisa - Campus de Beaulieu
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35042 RENNES Cedex - France
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| Tel |
+33 2 99 84 71 16
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| Fax |
+33 2 99 84 71 71
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| Current Position |
PhD Student
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CV (link)
Journal Articles and Preprints
- C Guziolowski, A Bourde, F Moreews, A Siegel. "BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks". BMC Genomics 2009, 10:244 doi:10.1186/1471-2164-10-244. (Web access)
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P Veber, C Guziolowski, M Le Borgne, O Radulescu, and A Siegel. "Inferring the role of transcription factors in regulatory networks". BMC Bioinformatics 2008 9: 228 doi:10.1186/1471-2105-9-228. (Web access)
- C Guziolowski, P Veber, M Le Borgne, O Radulescu, and A Siegel. "Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study"
Journal of Biological Physics and Chemistry 7 2007 37-43 (preprint.pdf). Technical Report RR-6190 INRIA (link)
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A. Siegel, C. Guziolowski, P. Veber, O. Radulescu, M. Le Borgne. "Optimiser un plan d'expérience à partir de modèles qualitatifs?" BioFutur 2006, 275:27 (preprint.pdf)
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G.Didier and C.Guziolowski. "Mapping Sequences by Parts"Algorithms for Molecular Biology 2007, 2:11doi:10.1186/1748-7188-2-11. (Web access)
- M.Latorre, H.Silva, J.Saba, C.Guziolowski, P.Vizoso, V.Martinez, J.Maldonado, A.Morales, R.Caroca, V.Cambiazo, R.Campos-Vargas, M.Gonzalez, A.Orellana, J.Retamales, L.A.Meisel
"JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow" BMC Bioinformatics 2006,7:513 doi:10.1186/1471-2105-7-513 (Web access)
Articles in International Conferences
- S Blachon, G Stoll, C Guziolowski, A Zinovyev, E Barillot, A Siegel, O Radulescu "Method for relating inter-patient gene copy
numbers variations with gene expression via gene influence networks", BMIINT'09: Biomedical Informatics & Intelligent Methods in the support of Genomic Medicine, Thessaloniki, Grece 2009. (Web access )
- C Guziolowski, J Gruel, O Radulescu, A Siegel 'Curating a large-scale regulatory network by evaluating its consistency with expression datasets', CIBB'08: 5th International Conference on Bioinformatics and Biostatistics, Salerno, Italy 2008, Lecture Notes in Computer Science, Springer vol. 5488, pp. 144-155 2009 (selected paper) (slides) (Web access )
- A Siegel, M Le Borgne, O Radulescu, C Guziolowski, P Veber ''Qualitative response of interaction networks: application to the validation of biological models', Contribution to minisymposium New Research in Bioinformatics. ICIAM'07: 6th International Congress on Industrial and Applied Mathematics, PAMM, vol. 7, no. 1, pp. 1121803-1121804, Zurich 2007.
- C Guziolowski, P Veber, M Le Borgne, O Radulescu, A Siegel 'Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study' , RIAMS'06: Réseaux d'interaction, analyse, modélisation et simulation. Lyon, France 2006. (file.pdf) (slides)
Bioinformatic Applications
- Bioquali Cytoscape Plugin. Web access (Cytoscape Plugins)
- Pyquali/Bioquali. A tool dedicated to the analysis of compatibilities between an interaction graph and micro-array data. Web access
- A Data Management System that facilitates the Analysis of Large Volumes of Information in an EST Project Workflow. Web access
Meetings and presentations
- "“Plugin BioQuali pour Cytoscape: un nouvel outil mis en place sur la plate-forme”", Workshop in Gen2Bio: Les rencontres Biotech organises par OUEST-genopole, La Baule, March 2009 (slides)
- "Qualitative functions to better modelling the EWS/FLI1 signalling network", SITCON project meeting, Paris, December 2008 (slides)
- "Adding missing post-transcriptional regulations to a regulatory network" JOBIM 2008 satellite meeting : Dynamical modelling and simulation of biological networks, Lille France 2008 (slides)
- "Qualitative modelling of post-transcriptional effects in the EWS/FLI1 signalling network", SITCON project meeting, Paris, May 2008 (slides)
- "Mapping sequences by parts", in Seminaire Bioinformatique, Symbiose, IRISA-INRIA, Rennes, France 2008 (slides)
- 'Inferring the role of transcription factors in regulatory networks', in The 2nd International Course in Yeast Systems Biology ICYSB, Göteborg, Sweden 2007 (slides)
- 'Bioquali : tool for analyzing regulatory networks', Cinquièmes Rencontres autour de la plate-forme Bio-informatique Genouest, Rennes, France 2007 (slides)
Cursus
- 2005 - 2006: Master 2 Recherche en Bioinformatique, "Université de Rennes 1" Rennes [http://www.univ-rennes1.fr/]
- 2005. Computer Engineer at the "Genomica Funcional en Nectarines" project in Santiago - Chile. [http://www.genomavegetal.cl]
- 2005. Computer Engineer at the 'Laboratorio de Bioinformatica y Matematica del Genoma (LBGM)", CMM Department of the University of Chile. Santiago - Chile.
- 1999 - 2005: Computer Science/Engineering (Ingeniero Civil en Computacion), "Universidad de Chile" Santiago - Chile. [http://www.dcc.uchile.cl]
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