| Publications of year 2004 |
| Articles in journal or book chapters |
| Logical information systems (LIS) use logic in a uniform way to describe their contents, to query it, to navigate through it, to analyze it, and to maintain it. They can be given an abstract specification that does not depend on the choice of a particular logic, and concrete instances can be obtained by instantiating this specification with a particular logic. In fact, a logic plays in a LIS the role of a schema in databases. We present the principles of LIS, the constraints they impose on the expression of logics, and hints for their effective implementation. |
@article{FerRid2003,
author = {Ferré, S. and Ridoux, O.},
title = {An Introduction to Logical Information Systems},
journal = {Information Processing \& Management},
year = {2004},
volume = {40},
number = {3},
pages = {383--419},
abstract = {Logical information systems (LIS) use logic in a uniform way to describe their contents, to query it, to navigate through it, to analyze it, and to maintain it. They can be given an abstract specification that does not depend on the choice of a particular logic, and concrete instances can be obtained by instantiating this specification with a particular logic. In fact, a logic plays in a LIS the role of a schema in databases. We present the principles of LIS, the constraints they impose on the expression of logics, and hints for their effective implementation.},
ps = {http://www.irisa.fr/LIS/ferre/papers/ipm2004.ps.gz},
pdf = {http://www.irisa.fr/LIS/ferre/papers/ipm2004.pdf},
keywords = {theorem proving, deduction, representation language, query formulation, information retrieval, information system},
}
| Conference articles |
| BLID (Bio-Logical Intelligent Database) is a bioinformatic system designed to help biologists extract new knowledge from raw genome data by providing high-level facilities for both data browsing and analysis. We describe BLIDrsquos novel data browsing system which is based on the idea of Logical Information Systems. This enables combined querying and navigation of data in BLID (extracted from public bioinformatic repositories). The browsing language is a logic especially designed for bioinformatics. It currently includes sequence motifs, taxonomies, and macromolecule structures, and it is designed to be easily extensible, as it is composed of reusable components. Navigation is tightly combined with this logic, and assists users in browsing a genome through a form of human-computer dialog. |
@inproceedings{FerKin2004a,
author = {Ferré, S. and King, R. D.},
title = {{BLID}: an Application of Logical Information Systems to Bioinformatics},
booktitle = {Int. Conf. Formal Concept Analysis},
pages = {47--54},
year = {2004},
series = {LNCS 2961},
editor = {P. Eklund},
publisher = {Springer},
ps = {http://www.irisa.fr/LIS/ferre/papers/icfca2004.ps.gz},
pdf = {http://www.irisa.fr/LIS/ferre/papers/icfca2004.pdf},
abstract = {BLID (Bio-Logical Intelligent Database) is a bioinformatic system designed to help biologists extract new knowledge from raw genome data by providing high-level facilities for both data browsing and analysis. We describe BLIDrsquos novel data browsing system which is based on the idea of Logical Information Systems. This enables combined querying and navigation of data in BLID (extracted from public bioinformatic repositories). The browsing language is a logic especially designed for bioinformatics. It currently includes sequence motifs, taxonomies, and macromolecule structures, and it is designed to be easily extensible, as it is composed of reusable components. Navigation is tightly combined with this logic, and assists users in browsing a genome through a form of human-computer dialog.},
keywords = {bioinformatics, information system, logical concept analysis},
}
This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All person copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.
Les documents contenus dans ces répertoires sont rendus disponibles par les auteurs qui y ont contribué en vue d'assurer la diffusion à temps de travaux savants et techniques sur une base non-commerciale. Les droits de copie et autres droits sont gardés par les auteurs et par les détenteurs du copyright, en dépit du fait qu'ils présentent ici leurs travaux sous forme électronique. Les personnes copiant ces informations doivent adhérer aux termes et contraintes couverts par le copyright de chaque auteur. Ces travaux ne peuvent pas être rendus disponibles ailleurs sans la permission explicite du détenteur du copyright.
This document was translated from BibTEX by bibtex2html